Citing

When using ProDy or NMWiz in published work, please cite:

Bakan A, Meireles LM, Bahar I.
ProDy: Protein Dynamics Inferred from Theory and Experiments.
Bioinformatics 2011 27(11):1575-1577.
Bakan A, Dutta A, Mao W, Liu Y, Chennubhotla C, Lezon TR, Bahar I.
Evol and ProDy for Bridging Protein Sequence Evolution and Structural Dynamics.
Bioinformatics 2014 30(18):2681-2683.
Zhang S, Krieger JM, Zhang Y, Kaya C, Kaynak B, Mikulska-Ruminska K, Doruker P, Li H, Bahar I.
ProDy 2.0: Increased Scale and Scope after 10 Years of Protein Dynamics Modelling with Python.
Bioinformatics 2021 37(20):3657-3659.

When using pairwise2 or KDTree modules in published work, please cite:

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.
Biopython: freely available Python tools for computational molecular biology and bioinformatics.
Bioinformatics 2009 25(11):1422-3.